A great set of tutorials on de novo genome assembly by @lexnederbragt

Standard

Check out the documents for the class he runs at the University of Oslo here. Great place to start on learning about it.

It covers:

  • 01_Assembly_using_velvet
  • 02_Mapping_reads_to_an_assembly
  • 03_Assembly_using_celera
  • 04_Evaluating_assemblies_with_Quast
  • 05_Evaluating_assemblies_with_FRCbam
  • 06_Assembly_using_SPADES
  • 07_Assembly_using_newbler
  • 08_Assembly_improvement_using_REAPR