Publications, Presentations and Projects

Page

Selected Publications

Pass D.A., Sornay E, Marchbank A, Crawford MR, Paszkiewicz K, et al. (2017) Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis. PLOS Genetics 13(9): https://doi.org/10.1371/journal.pgen.1006988

Pass D. A., Morgan A.J., Read D. S., Field D., Weightman A. J., Kille P., (2014). The effect of anthropogenic arsenic contamination on the earthworm microbiome. Environmental Microbiology
DOI: 10.1111/1462-2920.12712. PDF

Turroni, F., Peano, C., Pass, D. A., Foroni, E., Severgnini, M., Claesson, M. J., Kerr, C., et al. (2012). Diversity of bifidobacteria within the infant gut microbiota. PloS one, 7(5), e36957. DOI:10.1371/journal.pone.0036957. PDF

Kelly M., Boonham N., Juggins S., Kille P., Mann D., Pass D., Sapp M., Sato S., Glover R.. A DNA based metabarcoding approach to assess diatom communities in rivers. https://www.gov.uk/government/publications/a-dna-based-metabarcoding-approach-to-assess-diatom-communities-in-rivers


Software

PWD: https://github.com/ChromatinCardiff/DanielPassProcessingPipelines

Pass, D. A. (2017) BAM2SizePlot – 2D and 3D figure generation from Paired-End sequence data from digested genomic DNA Source: https://github.com/ChromatinCardiff/ALD

PROMpT –  Primary Rapid Overview of Metagenomic Taxonomy


Platform Presentations 

2016
Pass, D. A., Sornay, E., Kent, N. A., Murray, J.A.H., Describing the importance of cell cycling regulators and the weak influence of environmental conditions on dynamic chromatin reorganisation in Arabidopsis thaliana, utilising ‘omic sequencing. Society for Experimental Biology, Brighton.

2014
Pass, D. A., Read, D. M, Weightman, A. J., Kille, P., The Voxel Worm: Defining a spatial microbiomic model of the of the earthworm Lumbricus rubellus.. International Environmental Omics Synthesis conference, University of Liverpool.

2013
Pass, D. A., Morgan, A. J., Field, D., Read, D. M, Weightman, A. J., Kille, P., Characterising the earthworm microbiome across an extreme arsenic gradient. International Environmental Omics Synthesis conference, Cardiff University.
Pass, D. A., Cunha, L., Novo, M, R., Morgan, A. J., Kille, P., Stress in a hot place: The effect of volcanic soils on earthworm-associated microbiota in a transplant study. Molecular Microbial Ecology Group, University of Essex.

2012
Pass, D. A., Morgan, A. J., Field, D., Read, D. M, Weightman, A. J., Kille, P., Examining the host-associated microbiota of the earthworm Lumbricus rubellus in an extreme arsenic contaminated habitat. Molecular Microbial Ecology Group, University of East Anglia